exRNAdisease

Entry Detail

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General Information

Database ID: exR0379753 RNA Name: HLA-DPA1 RNA Type: mRNA Chromosome: chr6 Starnd: - Coordinate: Start Site(bp): 33064569 End Site(bp): 33080775 External Links: ENSG00000231389

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD14B chr3 51968510 51983409 - ABLIM1 chr10 114431113 114768061 - AC004922.1 chr7 99325879 99394653 + AC005258.1 chr19 2269525 2341172 + AC006064.6 chr12 6556886 6607367 - AC008982.1 chr19 38817471 38840178 - AC010547.4 chr16 71447600 71489311 - AC020915.5 chr19 58228914 58315183 + AC026464.4 chr16 69299682 69322700 + AC138811.2 chr16 18788063 18801519 - ACADM chr1 75724347 75787575 + ACAP1 chr17 7336529 7351477 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR3 chr2 113890063 113962596 + ADAR chr1 154582057 154628013 - ADIPOR1 chr1 202940826 202958572 - ADK chr10 74151202 74709963 + ADSL chr22 40346500 40390463 + AGPAT5 chr8 6708642 6761503 + AHCY chr20 34280268 34311802 - AK2 chr1 33007940 33080996 - AKT2 chr19 40230317 40285536 - AL022238.4 chr22 40346529 40410054 + AL136295.1 chr14 24189157 24213473 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007283.1 chr2 201166965 201167546 + AC140125.2 chr5 177782197 177794396 + AL096870.2 chr14 24209646 24215987 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA