exRNAdisease

Entry Detail

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General Information

Database ID: exR0379754 RNA Name: HLA-DPB1 RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 33075990 End Site(bp): 33089696 External Links: ENSG00000223865

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCF1 chr6 30571393 30597179 + ABHD14B chr3 51968510 51983409 - AC004832.3 chr22 30409255 30428990 + AC004922.1 chr7 99325879 99394653 + AC007192.1 chr19 18153158 18178117 + AC008878.3 chr19 7382834 7470241 + AC011462.1 chr19 41350853 41425001 + AC020909.1 chr19 50415799 50428409 + AC120057.2 chr17 7240427 7244635 - ACACA chr17 37084992 37406836 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - AEN chr15 88621337 88632281 + AFMID chr17 78187317 78207701 + AHCYL1 chr1 109984765 110023742 + AKR1A1 chr1 45550543 45570049 + AL136454.1 chr1 192716132 192716653 + AL669918.1 chr6 32813767 32838822 - AL928654.3 chr14 105487199 105492267 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010327.5 chr19 55216660 55221616 + AC016730.1 chr2 13723048 13758152 + AC026471.1 chr16 31456711 31459736 - AC051619.7 chr15 45200325 45200632 - AC139149.1 chr17 81514047 81527776 + AC245014.3 chr1 145281116 145281462 + AL137782.1 chr13 75549773 75807120 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA