exRNAdisease

Entry Detail

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General Information

Database ID: exR0379760 RNA Name: HLA-DRB1 RNA Type: mRNA Chromosome: chr6 Starnd: - Coordinate: Start Site(bp): 32578769 End Site(bp): 32589848 External Links: ENSG00000196126

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCF1 chr6 30571393 30597179 + ABHD17A chr19 1876810 1885547 - AC004832.3 chr22 30409255 30428990 + AC005258.1 chr19 2269525 2341172 + AC007192.1 chr19 18153158 18178117 + AC010422.3 chr19 12643831 12648397 - AC018523.2 chr11 14493783 14520344 - AC026464.1 chr16 69335276 69351730 - AC026464.3 chr16 69335091 69356306 - AC040162.1 chr16 67929614 67936017 - AC068946.2 chr2 219209772 219222738 - AC092143.1 chr16 89919165 89936092 + ACAT2 chr6 159762045 159779112 + ACOT13 chr6 24667035 24705065 + ACTA1 chr1 229431245 229434098 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR1A chr10 102461881 102502712 - ACTR2 chr2 65227753 65271253 + ADH5 chr4 99070978 99088801 - AHCYL1 chr1 109984765 110023742 + AKAP11 chr13 42272152 42323261 + AKNA chr9 114334156 114394405 - AL034430.1 chr20 10413520 10431922 - AL121594.1 chr14 35122549 35317474 + AL139011.2 chr1 160216800 160285130 - AL603832.3 chr1 112702614 112711433 - AL669918.1 chr6 32813767 32838822 - ALDH4A1 chr1 18871430 18902724 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC009403.1 chr7 155611231 155645205 - AC010168.2 chr12 14762504 14767931 - AC011467.3 chr19 22603269 22608501 + AC012368.1 chr2 64143239 64252859 + AC026362.1 chr12 122975320 122982907 + AC079781.5 chr7 97851688 97972985 - AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + AL031282.2 chr1 1702736 1737688 - AL049795.2 chr1 32170733 32176568 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA