exRNAdisease

Entry Detail

---



General Information

Database ID: exR0379762 RNA Name: HLA-E RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 30489509 End Site(bp): 30494194 External Links: ENSG00000204592

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AASS chr7 122073549 122144255 - ABCA3 chr16 2275881 2340746 - ABCB6 chr2 219209772 219218994 - ABLIM1 chr10 114431113 114768061 - AC007192.1 chr19 18153158 18178117 + AC011448.1 chr19 19516227 19536076 + AC097637.1 chr3 52221081 52231190 - AC120057.2 chr17 7240427 7244635 - ACTA2 chr10 88935074 88991339 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR8 chr3 53867066 53882152 - ADCY3 chr2 24819169 24919839 - ADPRHL2 chr1 36088892 36093932 + AGFG2 chr7 100539203 100568220 + AHCY chr20 34280268 34311802 - AL133352.1 chr10 100505628 100529881 - AL136454.1 chr1 192716132 192716653 + AL358113.1 chr9 69035747 69255187 + AL928654.3 chr14 105487199 105492267 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3615 chr17 74748663 74748683 + hsa-miR-4426 chr1 192716333 192716349 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC019205.1 chr6 73263212 73301789 + AC026461.1 chr16 56682470 56687807 + AC107926.1 chr17 20963722 20980238 + AF274573.1 chrX 150915813 150920938 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA