exRNAdisease

Entry Detail

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General Information

Database ID: exR0379780 RNA Name: HMGB2 RNA Type: mRNA Chromosome: chr4 Starnd: - Coordinate: Start Site(bp): 173331376 End Site(bp): 173334432 External Links: ENSG00000164104

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCA3 chr16 2275881 2340746 - ACAD10 chr12 111686056 111757107 + ACKR3 chr2 236567787 236582354 + ACTG1 chr17 81509971 81523847 - ACTR3 chr2 113890063 113962596 + ADAM23 chr2 206443532 206621127 + ADPGK chr15 72751369 72785846 - ADTRP chr6 11712054 11807046 - AGBL5 chr2 27042364 27070622 + AHR chr7 16916359 17346152 + AKAP10 chr17 19904302 19978343 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006064.5 chr12 6510275 6510522 + AC012321.1 chr16 69703065 69704652 + AC018647.2 chr7 35695214 35699413 + AC024940.6 chr12 31280422 31280895 - AC097478.1 chr4 89743792 89744305 + AC097534.1 chr4 173322206 173329694 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA