exRNAdisease

Entry Detail

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General Information

Database ID: exR0379786 RNA Name: HMGCS1 RNA Type: mRNA Chromosome: chr5 Starnd: - Coordinate: Start Site(bp): 43287470 End Site(bp): 43313512 External Links: ENSG00000112972

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAAS chr12 53307456 53324864 - AC008575.1 chr5 112827213 112867582 + AC010646.1 chr19 17235940 17255448 - AC092143.1 chr16 89919165 89936092 + AC120057.2 chr17 7240427 7244635 - ACOT9 chrX 23701055 23766475 - ADAR chr1 154582057 154628013 - ADNP chr20 50888916 50931437 - AEBP1 chr7 44104345 44114562 + AGFG1 chr2 227472152 227561214 + AHCYL2 chr7 129225023 129430211 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-let-7d-5p chr9 94178841 94178862 + hsa-miR-18a-5p chr13 91350756 91350778 + hsa-miR-199a-5p chr1 172144592 172144614 - hsa-miR-34a-5p chr1 9151735 9151756 - hsa-miR-199b-5p chr9 128244783 128244805 - hsa-miR-23b-3p chr9 95085265 95085287 + hsa-miR-302b-3p chr4 112648489 112648511 - hsa-miR-296-3p chr20 58817626 58817647 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004847.1 chr7 44958999 44960909 - AC016876.2 chr17 7581964 7584086 - AC079781.5 chr7 97851688 97972985 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA