exRNAdisease

Entry Detail

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General Information

Database ID: exR0379806 RNA Name: HNRNPA0 RNA Type: mRNA Chromosome: chr5 Starnd: - Coordinate: Start Site(bp): 137745651 End Site(bp): 137754363 External Links: ENSG00000177733

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AACS chr12 125065434 125143333 + ABCA2 chr9 137007234 137028922 - AC005258.1 chr19 2269525 2341172 + AC006030.1 chr2 74211604 74363377 - AC010422.3 chr19 12643831 12648397 - AC010463.1 chr19 17267418 17282966 + AC087289.3 chr17 75898645 75930129 - AC093525.2 chr16 2496032 2520218 + AC097637.1 chr3 52221081 52231190 - AC099811.2 chr17 42119674 42154916 - AC107871.1 chr15 68184032 68229718 - AC129492.3 chr17 8150816 8162975 - AC135050.2 chr16 31083439 31094956 - ACAT2 chr6 159762045 159779112 + ACOT7 chr1 6264269 6394391 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTN1 chr14 68874143 68979440 - ADAR chr1 154582057 154628013 - AGGF1 chr5 77029251 77065234 + AKAP8 chr19 15353385 15379798 - AKIRIN1 chr1 38991276 39006059 + AL021546.1 chr12 120438198 120460006 + AL117348.2 chr1 225886696 225924278 - AL121594.1 chr14 35122549 35317474 + AL136531.2 chr20 1317571 1393096 - AL365205.1 chr6 41780349 41790141 + ALAS1 chr3 52198086 52214327 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-21-5p chr17 59841273 59841294 + hsa-miR-1181 chr19 10403505 10403525 - hsa-miR-1248 chr3 186786675 186786701 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002094.1 chr17 28357647 28381697 + AC007952.4 chr17 19112000 19112636 - AC010327.5 chr19 55216660 55221616 + AC012485.1 chr2 238231684 238255633 + AC016876.2 chr17 7581964 7584086 - AC068134.2 chr2 232420661 232421461 - AC087190.3 chr16 9104848 9113181 + AC132217.1 chr11 2129121 2129964 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA