exRNAdisease

Entry Detail

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General Information

Database ID: exR0379807 RNA Name: HNRNPA1 RNA Type: mRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 54280193 End Site(bp): 54287088 External Links: ENSG00000135486

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAGAB chr15 67200667 67255195 - AAMP chr2 218264123 218270257 - ABHD4 chr14 22598237 22613215 + ABL1 chr9 130713016 130887675 + AC004832.3 chr22 30409255 30428990 + AC006064.6 chr12 6556886 6607367 - AC010422.3 chr19 12643831 12648397 - AC073082.1 chr2 48632291 48755724 - AC120057.2 chr17 7240427 7244635 - AC138894.1 chr16 28456371 28492098 - ACKR3 chr2 236567787 236582354 + ACOT8 chr20 45841721 45857405 - ACTB chr7 5527148 5563784 - ACTR5 chr20 38748460 38772520 + ADRM1 chr20 62302093 62308862 + AGBL5 chr2 27042364 27070622 + AHSA1 chr14 77457870 77469472 + AKAP17A chrX 1591604 1602520 + ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004069.1 chr4 105137280 105140619 - AC008969.1 chr19 58002061 58011232 + AC009055.2 chr16 65190973 65234914 - AC087190.3 chr16 9104848 9113181 + AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AGAP11 chr10 86970741 87010126 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA