exRNAdisease

Entry Detail

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General Information

Database ID: exR0379826 RNA Name: HNRNPU RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 244840638 End Site(bp): 244864560 External Links: ENSG00000153187

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCC4 chr13 95019835 95301475 - AC004922.1 chr7 99325879 99394653 + AC010422.3 chr19 12643831 12648397 - AC012184.2 chr16 70299194 70372582 + AC116366.3 chr5 132410832 132646079 + AC131160.1 chr3 183815568 183884889 - AC138811.2 chr16 18788063 18801519 - AC140504.1 chr16 15395754 15515348 + ACLY chr17 41866917 41930542 - ACSL3 chr2 222860942 222944639 + ACTA1 chr1 229431245 229434098 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR1A chr10 102461881 102502712 - ADARB1 chr21 45073853 45226560 + ADD1 chr4 2843857 2930076 + ADGRV1 chr5 90529344 91164437 + ADPRHL2 chr1 36088892 36093932 + AFTPH chr2 64524305 64593005 + AGO2 chr8 140520156 140635633 - AGO4 chr1 35808016 35857890 + AGRN chr1 1020120 1056118 + AHCY chr20 34280268 34311802 - AIDA chr1 222668013 222713210 - AKAP8L chr19 15380050 15419141 - AKNA chr9 114334156 114394405 - AL136531.2 chr20 1317571 1393096 - AL138752.2 chr9 37588413 38068687 - ALDH1B1 chr9 38392702 38398661 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-1244 chr2 231713368 231713393 + hsa-miR-3654 chr7 133034860 133034878 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010542.4 chr16 66549280 66551189 + AC016876.2 chr17 7581964 7584086 - AC124068.2 chr15 89335053 89336161 + AC132217.1 chr11 2129121 2129964 - AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA