exRNAdisease

Entry Detail

---



General Information

Database ID: exR0379954 RNA Name: HSP90AA1 RNA Type: mRNA Chromosome: chr14 Starnd: - Coordinate: Start Site(bp): 102080738 End Site(bp): 102139699 External Links: ENSG00000080824

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC093525.2 chr16 2496032 2520218 + ADD3 chr10 109996368 110135565 + AL110118.2 chr14 93184973 93218586 + ADCY5 chr3 123282296 123449758 - AL133352.1 chr10 100505628 100529881 - AFDN chr6 167826922 167972023 + ACLY chr17 41866917 41930542 - AL034430.1 chr20 10413520 10431922 - ACO1 chr9 32384603 32454769 + AL121753.1 chr20 35267885 35280043 - ABR chr17 1003518 1229738 - AD000671.1 chr19 35745678 35754519 + AKAP1 chr17 57085092 57121346 + AIF1L chr9 131096476 131123152 + AC015813.2 chr17 57989038 58007246 - AHCY chr20 34280268 34311802 - ACTG1 chr17 81509971 81523847 - AC120057.2 chr17 7240427 7244635 - AKIRIN2 chr6 87674860 87702233 - AL136454.1 chr1 192716132 192716653 + ABCD3 chr1 94418389 94518666 + ACTN1 chr14 68874143 68979440 - ALDH7A1 chr5 126531200 126595362 - AC091167.2 chr15 90249556 90272208 + ABLIM1 chr10 114431113 114768061 - AC023055.1 chr12 55757275 55827546 - AC010422.3 chr19 12643831 12648397 - AL139011.2 chr1 160216800 160285130 - AAMP chr2 218264123 218270257 - AEN chr15 88621337 88632281 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-103a-3p chr5 168560904 168560926 - hsa-miR-146a-5p chr5 160485372 160485393 + hsa-miR-1306-3p chr22 20086112 20086129 + hsa-miR-4709-5p chr14 74480175 74480196 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006511.5 chr12 8014093 8019007 - AC007952.4 chr17 19112000 19112636 - AC024940.6 chr12 31280422 31280895 - AC078883.1 chr2 172480840 172556596 - AC113189.2 chr17 7420103 7444081 + AC113189.4 chr17 7439506 7445966 + AC132217.1 chr11 2129121 2129964 - AC139149.1 chr17 81514047 81527776 + AC145207.5 chr17 81878425 81881106 - AF106564.1 chr8 24912165 24914717 - AL136985.3 chr1 58715609 58771295 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA