exRNAdisease

Entry Detail

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General Information

Database ID: exR0379955 RNA Name: HSP90AB1 RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 44246166 End Site(bp): 44253888 External Links: ENSG00000096384

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AGBL5 chr2 27042364 27070622 + ADAM10 chr15 58588809 58749791 - AC022384.1 chr3 10249372 10285796 + AC008982.1 chr19 38817471 38840178 - AKIRIN2 chr6 87674860 87702233 - AHCYL2 chr7 129225023 129430211 + AC068946.1 chr2 219075329 219170827 - AC007192.1 chr19 18153158 18178117 + ALDH4A1 chr1 18871430 18902724 - AKAP1 chr17 57085092 57121346 + ALDOA chr16 30064164 30070457 + AC135050.2 chr16 31083439 31094956 - ABCB6 chr2 219209772 219218994 - AGPAT5 chr8 6708642 6761503 + ABHD14A-ACY1 chr3 51974706 51989183 + ADPRM chr17 10697594 10711558 + AK4 chr1 65147549 65232145 + ABRACL chr6 139028745 139043302 + AGO3 chr1 35930718 36072500 + ACIN1 chr14 23058564 23095614 - AC005726.1 chr17 28455752 28614185 - AL358075.4 chr1 46043661 46176488 - AKT1 chr14 104769349 104795751 - ADCY2 chr5 7396138 7830081 + AKR1B1 chr7 134442356 134459284 - ABL1 chr9 130713016 130887675 + AJAP1 chr1 4654609 4792534 + ADAM23 chr2 206443532 206621127 + AARS2 chr6 44298731 44313347 - AKAP8L chr19 15380050 15419141 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-320a-3p chr8 22244975 22244996 - hsa-miR-485-5p chr14 101055427 101055448 + hsa-miR-4485-3p chr11 10508277 10508296 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC009133.5 chr16 29808679 29812227 + AC010642.2 chr19 58309727 58327248 - AC016026.1 chr22 17787652 17811497 - AC016876.2 chr17 7581964 7584086 - AC021078.1 chr5 149494314 149504670 - AC023509.1 chr12 53441741 53467528 + AC024940.6 chr12 31280422 31280895 - AC026362.1 chr12 122975320 122982907 + AC026464.2 chr16 69463844 69466264 + AC064802.1 chr8 114282067 114295839 + AC079781.5 chr7 97851688 97972985 - AC091820.1 chr5 167296234 167303372 - AC092143.3 chr16 89906157 89918233 + AC097478.1 chr4 89743792 89744305 + AC104109.2 chr5 134226410 134227827 + AC109460.3 chr16 28974804 28990775 + AC132217.1 chr11 2129121 2129964 - AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + AL121749.1 chr10 35604485 35608153 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA