exRNAdisease

Entry Detail

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General Information

Database ID: exR0379969 RNA Name: HSPA8 RNA Type: mRNA Chromosome: chr11 Starnd: - Coordinate: Start Site(bp): 123057489 End Site(bp): 123063230 External Links: ENSG00000109971

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCB4 chr7 87401697 87480435 - AC018523.2 chr11 14493783 14520344 - AC004922.1 chr7 99325879 99394653 + ACBD5 chr10 27195214 27242130 - AKIRIN1 chr1 38991276 39006059 + AC008763.3 chr19 7678501 7682854 + AC138811.2 chr16 18788063 18801519 - ADSL chr22 40346500 40390463 + AC008758.1 chr19 12461559 12551474 - ADM chr11 10305073 10307397 + AC009133.6 chr16 29812261 29820092 + AC245033.1 chr15 82536788 82573194 - ACTR1B chr2 97655939 97664044 - AFDN chr6 167826922 167972023 + ABCG2 chr4 88090150 88231628 - AGPAT5 chr8 6708642 6761503 + AKT1 chr14 104769349 104795751 - ACTB chr7 5527148 5563784 - AL133352.1 chr10 100505628 100529881 - ACAA2 chr18 49782164 49813953 - AK4 chr1 65147549 65232145 + AC091959.3 chr5 146203550 146339251 + AGPAT3 chr21 43865223 43987592 + ACTR2 chr2 65227753 65271253 + AC139530.2 chr17 81703371 81720539 + ACAT2 chr6 159762045 159779112 + AL136295.4 chr14 24180395 24190416 - AC091167.2 chr15 90249556 90272208 + AL022238.4 chr22 40346529 40410054 + ACTG1 chr17 81509971 81523847 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-155-5p chr21 25573983 25574006 + hsa-miR-302c-3p chr4 112648366 112648388 - hsa-miR-302a-5p chr4 112648224 112648246 - hsa-miR-632 chr17 32350169 32350187 + hsa-miR-3654 chr7 133034860 133034878 - hsa-miR-4485-3p chr11 10508277 10508296 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC008555.5 chr19 34891605 34905139 - AC012236.1 chr15 31221999 31230838 - AC016876.2 chr17 7581964 7584086 - AC040162.3 chr16 67882461 67886367 + AC067852.2 chr17 42552436 42554748 - AC106864.1 chr4 112693047 112706810 - AC132217.1 chr11 2129121 2129964 - AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + AL023653.1 chrX 129794994 129796963 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA