exRNAdisease

Entry Detail

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General Information

Database ID: exR0380348 RNA Name: IPO5 RNA Type: mRNA Chromosome: chr13 Starnd: + Coordinate: Start Site(bp): 97953658 End Site(bp): 98024296 External Links: ENSG00000065150

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAGAB chr15 67200667 67255195 - ABCB7 chrX 75051048 75156732 - ABCC5 chr3 183919934 184017939 - AC008982.1 chr19 38817471 38840178 - AC010132.3 chr7 42909273 42932174 - AC010422.3 chr19 12643831 12648397 - AC015813.2 chr17 57989038 58007246 - AC091167.2 chr15 90249556 90272208 + AC124312.1 chr15 24955034 25000276 + ACAD10 chr12 111686056 111757107 + ACTG1 chr17 81509971 81523847 - ACTR3B chr7 152759749 152855378 + ADCY1 chr7 45574140 45723116 + ADM chr11 10305073 10307397 + ADTRP chr6 11712054 11807046 - AGRN chr1 1020120 1056118 + AGTRAP chr1 11736084 11754802 + AHCY chr20 34280268 34311802 - AKAP10 chr17 19904302 19978343 - AL049629.2 chr11 33698261 33722467 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-6850-5p chr8 144791970 144791991 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC132217.1 chr11 2129121 2129964 - AC244153.1 chr17 38450394 38452444 - AL049543.1 chr6 28587378 28591747 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA