exRNAdisease

Entry Detail

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General Information

Database ID: exR0380465 RNA Name: ITM2C RNA Type: mRNA Chromosome: chr2 Starnd: + Coordinate: Start Site(bp): 230864639 End Site(bp): 230879248 External Links: ENSG00000135916

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD8 chr19 17292131 17310236 - AC010422.3 chr19 12643831 12648397 - AC013394.1 chr15 92883413 92949230 + AC092143.1 chr16 89919165 89936092 + AC124312.1 chr15 24955034 25000276 + AC135050.2 chr16 31083439 31094956 - ACP1 chr2 264140 278283 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADAM17 chr2 9488486 9556732 - ADNP2 chr18 80109262 80147523 + ADSL chr22 40346500 40390463 + AEN chr15 88621337 88632281 + AGPAT2 chr9 136673143 136687457 - AICDA chr12 8602170 8612867 - AK2 chr1 33007940 33080996 - AKAP13 chr15 85380571 85749358 + AL022238.4 chr22 40346529 40410054 + AL713999.1 chr1 155169409 155187272 - ALDH16A1 chr19 49453225 49471050 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4442 chr3 25664875 25664891 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC020663.1 chr16 4730115 4752565 - AC106864.1 chr4 112693047 112706810 - AL022311.1 chr22 37876148 37895563 + AL031282.2 chr1 1702736 1737688 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA