exRNAdisease

Entry Detail

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General Information

Database ID: exR0380704 RNA Name: KHDRBS1 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 32013868 End Site(bp): 32060850 External Links: ENSG00000121774

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005258.1 chr19 2269525 2341172 + AC006030.1 chr2 74211604 74363377 - AC008764.4 chr19 16577642 16660115 - AC022506.1 chr12 57517712 57520480 - AC073508.2 chr17 40627356 40665141 - ACACA chr17 37084992 37406836 - ACSL3 chr2 222860942 222944639 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADAM17 chr2 9488486 9556732 - ADAMTS19 chr5 129460281 129738683 + ADAMTS2 chr5 179110853 179345461 - ADCY8 chr8 130780301 131040909 - AFAP1L2 chr10 114294824 114404756 - AGL chr1 99850361 99924023 + AJUBA chr14 22971177 22982551 - AKAP17A chrX 1591604 1602520 + AL133352.1 chr10 100505628 100529881 - ALDH7A1 chr5 126531200 126595362 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC021078.1 chr5 149494314 149504670 - AC023509.1 chr12 53441741 53467528 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA