exRNAdisease

Entry Detail

---



General Information

Database ID: exR0380916 RNA Name: KPNB1 RNA Type: mRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 47649476 End Site(bp): 47685505 External Links: ENSG00000108424

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AARS2 chr6 44298731 44313347 - AC010422.3 chr19 12643831 12648397 - AC011448.1 chr19 19516227 19536076 + AC018523.2 chr11 14493783 14520344 - AC022826.2 chr8 73688691 73878854 - AC046185.1 chr17 63702845 63752097 - AC107871.1 chr15 68184032 68229718 - AC120057.2 chr17 7240427 7244635 - ACACA chr17 37084992 37406836 - ACKR3 chr2 236567787 236582354 + ACTG1 chr17 81509971 81523847 - ADGRA3 chr4 22345071 22516066 - ADH5 chr4 99070978 99088801 - AHCY chr20 34280268 34311802 - AKAP12 chr6 151239967 151358559 + AL136295.1 chr14 24189157 24213473 - AL136295.4 chr14 24180395 24190416 - AL603832.3 chr1 112702614 112711433 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007566.1 chr7 92457564 92495601 + AC020663.1 chr16 4730115 4752565 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA