exRNAdisease

Entry Detail

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General Information

Database ID: exR0380972 RNA Name: KRT8 RNA Type: mRNA Chromosome: chr12 Starnd: - Coordinate: Start Site(bp): 52897187 End Site(bp): 52949954 External Links: ENSG00000170421

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCC10 chr6 43427366 43450427 + ABTB1 chr3 127672935 127680926 + AC007192.1 chr19 18153158 18178117 + AC008982.1 chr19 38817471 38840178 - AC010422.3 chr19 12643831 12648397 - AC020915.5 chr19 58228914 58315183 + AC093323.1 chr4 6663396 6676755 + AC093525.1 chr16 2513965 2527955 + AC107871.1 chr15 68184032 68229718 - AC245033.1 chr15 82536788 82573194 - ACAP2 chr3 195274745 195443044 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTN4 chr19 38647649 38731589 + ACTR1B chr2 97655939 97664044 - AKAP8L chr19 15380050 15419141 - AKR1B1 chr7 134442356 134459284 - AKT1S1 chr19 49869033 49878459 - AL121758.1 chr20 646626 675800 - AL136295.4 chr14 24180395 24190416 - ALDH7A1 chr5 126531200 126595362 - ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC009133.5 chr16 29808679 29812227 + AC132217.1 chr11 2129121 2129964 - AC245033.4 chr15 82533175 82540008 - AL132780.1 chr14 22929607 22956374 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA