exRNAdisease

Entry Detail

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General Information

Database ID: exR0381052 RNA Name: LAMA5 RNA Type: mRNA Chromosome: chr20 Starnd: - Coordinate: Start Site(bp): 62307955 End Site(bp): 62367312 External Links: ENSG00000130702

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAAS chr12 53307456 53324864 - ABHD17B chr9 71862452 71910931 - ACKR3 chr2 236567787 236582354 + ACTA2 chr10 88935074 88991339 - ADAMTS1 chr21 26835755 26845409 - ADAMTS17 chr15 99971437 100342005 - ADCY1 chr7 45574140 45723116 + AKT2 chr19 40230317 40285536 - AL096711.2 chr6 127438406 127519001 - AL133352.1 chr10 100505628 100529881 - AL603832.3 chr1 112702614 112711433 - ALDH2 chr12 111766887 111817532 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-5100 chr10 42997630 42997651 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC124068.2 chr15 89335053 89336161 + AC245014.3 chr1 145281116 145281462 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA