exRNAdisease

Entry Detail

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General Information

Database ID: exR0381073 RNA Name: LAPTM4A RNA Type: mRNA Chromosome: chr2 Starnd: - Coordinate: Start Site(bp): 20032650 End Site(bp): 20051628 External Links: ENSG00000068697

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD12 chr20 25294742 25390835 - AC093525.2 chr16 2496032 2520218 + AC093827.5 chr4 86886472 86936178 - AC104472.3 chr3 155763043 155854442 - ACTG1 chr17 81509971 81523847 - ACTR3 chr2 113890063 113962596 + ADGRL1 chr19 14147743 14206187 - ADNP chr20 50888916 50931437 - ADPGK chr15 72751369 72785846 - AIF1L chr9 131096476 131123152 + AKIRIN1 chr1 38991276 39006059 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-155-5p chr21 25573983 25574006 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC020663.1 chr16 4730115 4752565 - AC023509.1 chr12 53441741 53467528 + AC093827.4 chr4 86924630 86936202 - AC126323.6 chr15 62274163 62278365 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA