exRNAdisease

Entry Detail

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General Information

Database ID: exR0381074 RNA Name: LAPTM4B RNA Type: mRNA Chromosome: chr8 Starnd: + Coordinate: Start Site(bp): 97775057 End Site(bp): 97853013 External Links: ENSG00000104341

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAGAB chr15 67200667 67255195 - ABCD3 chr1 94418389 94518666 + ABI2 chr2 203328239 203447728 + AC006064.6 chr12 6556886 6607367 - AC245033.1 chr15 82536788 82573194 - ACAT1 chr11 108116695 108147603 + ACTR3B chr7 152759749 152855378 + ADAMTS10 chr19 8580240 8610735 - AFF1 chr4 86935002 87141054 + AHCY chr20 34280268 34311802 - AHDC1 chr1 27534035 27604431 - AKT3 chr1 243488233 243851079 - AL139300.1 chr14 103562962 103685924 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC067930.1 chr8 143579636 143580670 + AC245033.4 chr15 82533175 82540008 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA