exRNAdisease

Entry Detail

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General Information

Database ID: exR0381116 RNA Name: LCP1 RNA Type: mRNA Chromosome: chr13 Starnd: - Coordinate: Start Site(bp): 46125920 End Site(bp): 46211871 External Links: ENSG00000136167

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCD4 chr14 74285269 74303055 - AC004922.1 chr7 99325879 99394653 + AC008982.1 chr19 38817471 38840178 - AC012254.2 chr18 47108188 47176345 - AC023055.1 chr12 55757275 55827546 - ACAP2 chr3 195274745 195443044 - ACBD5 chr10 27195214 27242130 - ACP1 chr2 264140 278283 + ACSS1 chr20 25006230 25058980 - ACTB chr7 5527148 5563784 - ACTBL2 chr5 57480018 57482811 - ACTG1 chr17 81509971 81523847 - ACTR3C chr7 150243916 150323725 - ADAR chr1 154582057 154628013 - ADSL chr22 40346500 40390463 + AFG3L2 chr18 12328944 12377227 - AFTPH chr2 64524305 64593005 + AGPAT4 chr6 161129967 161274061 - AHSA1 chr14 77457870 77469472 + AKR1A1 chr1 45550543 45570049 + AL021546.1 chr12 120438198 120460006 + AL022238.4 chr22 40346529 40410054 + AL109827.1 chr20 35632340 35674544 - AL139300.1 chr14 103562962 103685924 + ALAS1 chr3 52198086 52214327 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-155-5p chr21 25573983 25574006 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006064.5 chr12 6510275 6510522 + AC026202.2 chr3 5156905 5187329 - AC026202.3 chr3 5187172 5188298 - AC055860.1 chr11 18000542 18022931 - AC079781.5 chr7 97851688 97972985 - AC135048.1 chr16 30948386 30956511 + AC245014.3 chr1 145281116 145281462 + AL022311.1 chr22 37876148 37895563 + AL137058.2 chr13 52600042 52642542 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA