exRNAdisease

Entry Detail

---



General Information

Database ID: exR0381173 RNA Name: LGMN RNA Type: mRNA Chromosome: chr14 Starnd: - Coordinate: Start Site(bp): 92703807 End Site(bp): 92748679 External Links: ENSG00000100600

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCF2 chr7 151207837 151227166 - AC005258.1 chr19 2269525 2341172 + AC007192.1 chr19 18153158 18178117 + AC073082.1 chr2 48632291 48755724 - AC091959.3 chr5 146203550 146339251 + AC092143.1 chr16 89919165 89936092 + AC139530.2 chr17 81703371 81720539 + AC244197.3 chrX 149477104 149540926 - ACACB chr12 109116595 109268226 + AGO4 chr1 35808016 35857890 + AHNAK chr11 62433542 62556235 - AICDA chr12 8602170 8612867 - AIMP2 chr7 6009255 6023834 + AKAP17A chrX 1591604 1602520 + AL021546.1 chr12 120438198 120460006 + ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC067930.1 chr8 143579636 143580670 + AC245014.3 chr1 145281116 145281462 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA