exRNAdisease

Entry Detail

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General Information

Database ID: exR0381265 RNA Name: LMNB2 RNA Type: mRNA Chromosome: chr19 Starnd: - Coordinate: Start Site(bp): 2427638 End Site(bp): 2456959 External Links: ENSG00000176619

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AASS chr7 122073549 122144255 - ABI3 chr17 49210411 49223225 + AC005258.1 chr19 2269525 2341172 + AC008878.3 chr19 7382834 7470241 + AC011448.1 chr19 19516227 19536076 + AC138696.1 chr8 143247110 143276403 + AC138811.2 chr16 18788063 18801519 - AC138969.1 chr16 16317444 16350590 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTN4 chr19 38647649 38731589 + ADAM11 chr17 44758988 44781846 + ADD1 chr4 2843857 2930076 + ADK chr10 74151202 74709963 + ADM2 chr22 50481543 50486440 + AGAP1 chr2 235494043 236131800 + AHCY chr20 34280268 34311802 - AHCYL2 chr7 129225023 129430211 + AHSA1 chr14 77457870 77469472 + AKAP17A chrX 1591604 1602520 + AKT1 chr14 104769349 104795751 - AL021546.1 chr12 120438198 120460006 + ALAS1 chr3 52198086 52214327 + ALDH9A1 chr1 165662216 165698863 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4485-3p chr11 10508277 10508296 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AL022157.1 chrX 57121662 57127243 + AL096828.3 chr20 63218041 63218502 + AL117335.1 chr20 1888128 1894374 - AL118516.1 chr22 46761894 46762563 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA