exRNAdisease

Entry Detail

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General Information

Database ID: exR0381303 RNA Name: LPCAT1 RNA Type: mRNA Chromosome: chr5 Starnd: - Coordinate: Start Site(bp): 1456480 End Site(bp): 1523962 External Links: ENSG00000153395

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCB7 chrX 75051048 75156732 - ABHD17A chr19 1876810 1885547 - AC004922.1 chr7 99325879 99394653 + AC012184.2 chr16 70299194 70372582 + ACAT1 chr11 108116695 108147603 + ADD3 chr10 109996368 110135565 + ADRA1D chr20 4220630 4249287 - AFMID chr17 78187317 78207701 + AHCYL2 chr7 129225023 129430211 + AKT2 chr19 40230317 40285536 - AL157392.5 chr10 13610047 13655929 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC118344.1 chr19 40273489 40275479 - AC124068.2 chr15 89335053 89336161 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA