exRNAdisease

Entry Detail

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General Information

Database ID: exR0381448 RNA Name: LSP1 RNA Type: mRNA Chromosome: chr11 Starnd: + Coordinate: Start Site(bp): 1852970 End Site(bp): 1892267 External Links: ENSG00000130592

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005258.1 chr19 2269525 2341172 + AC007192.1 chr19 18153158 18178117 + AC010422.3 chr19 12643831 12648397 - AC024592.3 chr19 5866171 5903787 - AC092073.1 chr19 34396315 34409364 + AC129492.3 chr17 8150816 8162975 - ACCS chr11 44065925 44084237 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - AGFG1 chr2 227472152 227561214 + AK2 chr1 33007940 33080996 - AL928654.3 chr14 105487199 105492267 + ALDH1B1 chr9 38392702 38398661 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC068888.1 chr12 53012884 53054450 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA