exRNAdisease

Entry Detail

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General Information

Database ID: exR0381538 RNA Name: MACF1 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 39081316 End Site(bp): 39487177 External Links: ENSG00000127603

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AADAT chr4 170060222 170091699 - ABCB7 chrX 75051048 75156732 - ABCC1 chr16 15949577 16143074 + ABHD2 chr15 89087459 89202355 + AC124312.1 chr15 24955034 25000276 + ACLY chr17 41866917 41930542 - ADAR chr1 154582057 154628013 - ADCK5 chr8 144373101 144393242 + ADCY6 chr12 48766194 48789037 - ADPGK chr15 72751369 72785846 - ADSL chr22 40346500 40390463 + AL022238.4 chr22 40346529 40410054 + AL139011.2 chr1 160216800 160285130 - AL603832.3 chr1 112702614 112711433 - ALDH18A1 chr10 95605941 95656711 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-624-5p chr14 31014706 31014727 - hsa-miR-5100 chr10 42997630 42997651 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC084082.1 chr8 66112667 66126632 + AD000090.1 chr19 35557956 35581954 + AL049543.1 chr6 28587378 28591747 + AL132780.1 chr14 22929607 22956374 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA