exRNAdisease

Entry Detail

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General Information

Database ID: exR0381699 RNA Name: MARCKS RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 113857345 End Site(bp): 113863475 External Links: ENSG00000277443

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABT1 chr6 26596953 26600739 + AC009133.6 chr16 29812261 29820092 + AC010422.3 chr19 12643831 12648397 - AC011448.1 chr19 19516227 19536076 + AC048338.1 chr12 122207779 122266423 - AC087289.3 chr17 75898645 75930129 - ACKR3 chr2 236567787 236582354 + ACOT7 chr1 6264269 6394391 - ADAM15 chr1 155050566 155062775 + ADAR chr1 154582057 154628013 - ADCY1 chr7 45574140 45723116 + ADD3 chr10 109996368 110135565 + ADGRA3 chr4 22345071 22516066 - ADGRL2 chr1 81306160 81992436 + ADPRHL1 chr13 113399610 113453524 - AGPAT5 chr8 6708642 6761503 + ALDH9A1 chr1 165662216 165698863 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-19a-3p chr13 91350939 91350961 + hsa-miR-146a-5p chr5 160485372 160485393 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010478.1 chr5 51372736 51383332 - AC016394.2 chr10 73252791 73254349 + AC090114.2 chr7 128524016 128531069 - AC112907.3 chr3 186781780 186784179 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA