exRNAdisease

Entry Detail

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General Information

Database ID: exR0381797 RNA Name: MDC1 RNA Type: mRNA Chromosome: chr6 Starnd: - Coordinate: Start Site(bp): 30699807 End Site(bp): 30717447 External Links: ENSG00000137337

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCC1 chr16 15949577 16143074 + AC000093.1 chr22 19717220 19724772 + AC107871.1 chr15 68184032 68229718 - AC118553.2 chr1 99970011 100083321 + ADAM11 chr17 44758988 44781846 + ADAM23 chr2 206443532 206621127 + AEN chr15 88621337 88632281 + AFDN chr6 167826922 167972023 + AHCY chr20 34280268 34311802 - AKAP13 chr15 85380571 85749358 + AL603832.3 chr1 112702614 112711433 - AL669918.1 chr6 32813767 32838822 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC022150.4 chr19 52650437 52653284 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA