exRNAdisease

Entry Detail

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General Information

Database ID: exR0382151 RNA Name: MRFAP1 RNA Type: mRNA Chromosome: chr4 Starnd: + Coordinate: Start Site(bp): 6640091 End Site(bp): 6642745 External Links: ENSG00000179010

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AASS chr7 122073549 122144255 - ABCC1 chr16 15949577 16143074 + ABCD4 chr14 74285269 74303055 - AC009133.6 chr16 29812261 29820092 + AC023055.1 chr12 55757275 55827546 - AC118553.2 chr1 99970011 100083321 + AC245033.1 chr15 82536788 82573194 - ACSL3 chr2 222860942 222944639 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADGRL2 chr1 81306160 81992436 + AFDN chr6 167826922 167972023 + AK8 chr9 132725578 132878777 - AKIRIN1 chr1 38991276 39006059 + ALDH18A1 chr10 95605941 95656711 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-155-5p chr21 25573983 25574006 + hsa-miR-330-3p chr19 45639009 45639031 - hsa-miR-708-5p chr11 79402077 79402099 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004540.1 chr7 26398593 26497595 + AC010542.4 chr16 66549280 66551189 + AC079781.5 chr7 97851688 97972985 - AC093827.4 chr4 86924630 86936202 - AC097478.1 chr4 89743792 89744305 + AC106864.1 chr4 112693047 112706810 - AC126365.1 chr17 20788071 20789584 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA