exRNAdisease

Entry Detail

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General Information

Database ID: exR0382439 RNA Name: MYH9 RNA Type: mRNA Chromosome: chr22 Starnd: - Coordinate: Start Site(bp): 36281277 End Site(bp): 36388067 External Links: ENSG00000100345

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABI2 chr2 203328239 203447728 + ABLIM1 chr10 114431113 114768061 - AC010616.1 chr19 41956879 41994232 - AC018523.2 chr11 14493783 14520344 - ACAD10 chr12 111686056 111757107 + ACTA1 chr1 229431245 229434098 - ACTB chr7 5527148 5563784 - ACTN4 chr19 38647649 38731589 + ACTR1A chr10 102461881 102502712 - AD000671.1 chr19 35745678 35754519 + ADAM19 chr5 157395534 157575775 - ADCY6 chr12 48766194 48789037 - ADGRE1 chr19 6887566 6940459 + AK4 chr1 65147549 65232145 + ALDH16A1 chr19 49453225 49471050 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-25-3p chr7 100093571 100093592 - hsa-miR-214-3p chr1 172138816 172138837 - hsa-miR-27b-3p chr9 95085505 95085525 + hsa-miR-185-5p chr22 20033153 20033174 + hsa-miR-485-5p chr14 101055427 101055448 + hsa-miR-650 chr22 22822791 22822811 + hsa-miR-423-5p chr17 30117095 30117117 + hsa-miR-3609 chr7 98881700 98881723 + hsa-miR-6819-3p chr22 36286847 36286867 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005899.4 chr17 32328441 32329395 + AC016876.2 chr17 7581964 7584086 - AC019080.1 chr2 177283508 177392691 - AC026362.1 chr12 122975320 122982907 + AC051619.7 chr15 45200325 45200632 - AC106864.1 chr4 112693047 112706810 - AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA