exRNAdisease

Entry Detail

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General Information

Database ID: exR0382630 RNA Name: NCL RNA Type: mRNA Chromosome: chr2 Starnd: - Coordinate: Start Site(bp): 231453531 End Site(bp): 231483641 External Links: ENSG00000115053

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005258.1 chr19 2269525 2341172 + ADCYAP1R1 chr7 31052461 31111479 + AKR1B1 chr7 134442356 134459284 - AC027796.3 chr17 3585149 3636249 - AGPAT1 chr6 32168212 32178096 - AC006064.6 chr12 6556886 6607367 - AL136295.5 chr14 24147548 24166452 + ACACA chr17 37084992 37406836 - AC093525.2 chr16 2496032 2520218 + ABHD12 chr20 25294742 25390835 - ADPRH chr3 119579268 119589945 + AC018523.2 chr11 14493783 14520344 - AGPAT5 chr8 6708642 6761503 + AKAP8 chr19 15353385 15379798 - AC245033.1 chr15 82536788 82573194 - ABCD1 chrX 153724856 153744755 + ABCF1 chr6 30571393 30597179 + AFF4 chr5 132875395 132963634 - AFAP1 chr4 7758714 7939926 - AFTPH chr2 64524305 64593005 + ALDOA chr16 30064164 30070457 + AC013394.1 chr15 92883413 92949230 + ACTG1 chr17 81509971 81523847 - ADGRG6 chr6 142301854 142446266 + ACKR3 chr2 236567787 236582354 + ADAR chr1 154582057 154628013 - AC023055.1 chr12 55757275 55827546 - AHCY chr20 34280268 34311802 - AC009690.1 chr15 72284727 72375981 - ACAP1 chr17 7336529 7351477 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007780.1 chr17 68413623 68524949 + AC016876.2 chr17 7581964 7584086 - AC020663.1 chr16 4730115 4752565 - AC023509.1 chr12 53441741 53467528 + AC023908.3 chr15 39782571 39785617 + AC026461.1 chr16 56682470 56687807 + AC064802.1 chr8 114282067 114295839 + AC092143.2 chr16 89919827 89922662 - AC106864.1 chr4 112693047 112706810 - AC245033.4 chr15 82533175 82540008 - AL034346.1 chr6 1383790 1385066 - AL137129.1 chr14 61734138 61776260 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA