exRNAdisease

Entry Detail

General Information

Database ID:

exR0382637

RNA Name:

NCOA6

RNA Type:

mRNA

Chromosome:

chr20

Starnd:

-

Coordinate:

Start Site(bp):

34689097

End Site(bp):

34825651

External Links:

ENSG00000198646

Disease Information

Disease Name:	Low Birth Weight
Disease Category:	Other Diseases
MeSH ID:	D007230
Type:	Age Groups/Infant
Alias:	Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID:	GSE29807
Description:	Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns
Experimental Design:	Disease vs Control
Case Disease Type:	Low Birth Weight
Case Disease SubType:	NA
Case Sample:	Low Birth Weight
Control Sample:	Normal
Number of Case:	8
Number of Control:	4
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
ABCC10	chr6	43427366	43450427	+
AC023055.1	chr12	55757275	55827546	-
ADCY1	chr7	45574140	45723116	+
AGTRAP	chr1	11736084	11754802	+
AL020996.2	chr1	25811470	25823744	+

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-miR-10a-5p	chr17	48579904	48579926	-
hsa-miR-339-5p	chr7	1022990	1023012	-
hsa-miR-486-5p	chr8	41660484	41660505	-

circRNA targets:

NA

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC068338.2	chr15	75368155	75369584	+
AC124068.2	chr15	89335053	89336161	+

Display:

Experiment Detail

GEO ID:	GSE29807
Sample Source:	Cord Blood
Source Fraction:	Umblical Cord Blood
Platform:	GPL570
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	17063
Sample treatment protocol:	NA
RNA Extract protocol:	The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions.
RNA library preparation protocol:	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID:	NA
Title:	NA
Author:	NA
Journal:	NA
Description:	NA