exRNAdisease

Entry Detail

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General Information

Database ID: exR0382780 RNA Name: NFATC2IP RNA Type: mRNA Chromosome: chr16 Starnd: + Coordinate: Start Site(bp): 28950807 End Site(bp): 28967097 External Links: ENSG00000176953

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AATF chr17 36948954 37056871 + ABCB10 chr1 229516582 229558707 - AC010422.3 chr19 12643831 12648397 - AC015813.2 chr17 57989038 58007246 - ACTB chr7 5527148 5563784 - ACTN4 chr19 38647649 38731589 + ADAM10 chr15 58588809 58749791 - ADCY1 chr7 45574140 45723116 + AGAP1 chr2 235494043 236131800 + AGFG1 chr2 227472152 227561214 + AGO1 chr1 35869808 35930532 + AGRN chr1 1020120 1056118 + AK4 chr1 65147549 65232145 + AL136295.5 chr14 24147548 24166452 + ALDH1A2 chr15 57953424 58497866 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC009093.10 chr16 29139379 29331304 + AC025279.1 chr16 29291220 29372110 + AC026362.1 chr12 122975320 122982907 + AC132217.1 chr11 2129121 2129964 - AL136985.3 chr1 58715609 58771295 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA