exRNAdisease

Entry Detail

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General Information

Database ID: exR0382908 RNA Name: NME4 RNA Type: mRNA Chromosome: chr16 Starnd: + Coordinate: Start Site(bp): 396725 End Site(bp): 410367 External Links: ENSG00000103202

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCC1 chr16 15949577 16143074 + ABI2 chr2 203328239 203447728 + AC004922.1 chr7 99325879 99394653 + AC010132.3 chr7 42909273 42932174 - AC010422.3 chr19 12643831 12648397 - AC104452.1 chr3 49416777 49429314 - ACAP3 chr1 1292390 1309609 - ACIN1 chr14 23058564 23095614 - ACTN4 chr19 38647649 38731589 + ACTR2 chr2 65227753 65271253 + ADH5 chr4 99070978 99088801 - AKIRIN1 chr1 38991276 39006059 + AL117348.2 chr1 225886696 225924278 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-140-5p chr16 69933103 69933124 + hsa-miR-326 chr11 75335108 75335127 - hsa-miR-330-5p chr19 45639049 45639070 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004687.1 chr17 58330884 58332508 - AC073896.4 chr12 56162359 56190284 - AL118516.1 chr22 46761894 46762563 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA