exRNAdisease

Entry Detail

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General Information

Database ID: exR0383034 RNA Name: NPTX1 RNA Type: mRNA Chromosome: chr17 Starnd: - Coordinate: Start Site(bp): 80466834 End Site(bp): 80477843 External Links: ENSG00000171246

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AASS chr7 122073549 122144255 - ACACA chr17 37084992 37406836 - ACTB chr7 5527148 5563784 - ACVR1B chr12 51951699 51997078 + AHCYL2 chr7 129225023 129430211 + AKR1A1 chr1 45550543 45570049 + AKR7A2 chr1 19303965 19312146 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-92a-3p chrX 134169544 134169565 - hsa-miR-34c-5p chr11 111513451 111513473 + hsa-miR-301a-3p chr17 59151149 59151171 - hsa-miR-363-3p chrX 134169382 134169403 - hsa-miR-367-3p chr4 112647877 112647898 - hsa-miR-346 chr10 86264747 86264769 - hsa-miR-449a chr5 55170586 55170607 - hsa-miR-493-3p chr14 100869116 100869137 + hsa-miR-92b-3p chr1 155195237 155195258 + hsa-miR-449b-5p chr5 55170706 55170727 - hsa-miR-1224-5p chr3 184241405 184241423 + hsa-miR-1286 chr22 20249145 20249165 - hsa-miR-6818-3p chr22 30007092 30007113 + circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA