exRNAdisease

Entry Detail

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General Information

Database ID: exR0383161 RNA Name: NUCKS1 RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 205712822 End Site(bp): 205750182 External Links: ENSG00000069275

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ALDOA chr16 30064164 30070457 + AFAP1 chr4 7758714 7939926 - AC068946.2 chr2 219209772 219222738 - AC015813.2 chr17 57989038 58007246 - AC091959.3 chr5 146203550 146339251 + ACTR3 chr2 113890063 113962596 + AC005832.4 chr12 4604944 4662643 + ACSS2 chr20 34872146 34927962 + AC120057.2 chr17 7240427 7244635 - AGPAT3 chr21 43865223 43987592 + AC092143.1 chr16 89919165 89936092 + ALDH7A1 chr5 126531200 126595362 - ABRACL chr6 139028745 139043302 + ABCC1 chr16 15949577 16143074 + AGPAT1 chr6 32168212 32178096 - AC010422.3 chr19 12643831 12648397 - AC058822.1 chr4 53377839 54295272 + AL136454.1 chr1 192716132 192716653 + AC020915.5 chr19 58228914 58315183 + ACTR1A chr10 102461881 102502712 - ADAR chr1 154582057 154628013 - AKT2 chr19 40230317 40285536 - AL121594.1 chr14 35122549 35317474 + ACSL4 chrX 109624244 109733403 - AC010463.1 chr19 17267418 17282966 + AFF4 chr5 132875395 132963634 - AGL chr1 99850361 99924023 + AIMP2 chr7 6009255 6023834 + AHSP chr16 31527900 31528803 + AC008982.1 chr19 38817471 38840178 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-671-5p chr7 151238449 151238471 + hsa-miR-4426 chr1 192716333 192716349 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005005.3 chr22 31082156 31083565 - AC005899.4 chr17 32328441 32329395 + AC012368.1 chr2 64143239 64252859 + AC015522.1 chr8 83912713 84142463 + AC022784.3 chr8 9255349 9260295 - AC069281.2 chr7 100572232 100578700 - AC132217.1 chr11 2129121 2129964 - AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA