exRNAdisease

Entry Detail

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General Information

Database ID: exR0383208 RNA Name: NUP62 RNA Type: mRNA Chromosome: chr19 Starnd: - Coordinate: Start Site(bp): 49906825 End Site(bp): 49929763 External Links: ENSG00000213024

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABRACL chr6 139028745 139043302 + AC007192.1 chr19 18153158 18178117 + AC010422.3 chr19 12643831 12648397 - AC011462.1 chr19 41350853 41425001 + AC068946.2 chr2 219209772 219222738 - AC138696.1 chr8 143247110 143276403 + ACAA2 chr18 49782164 49813953 - ACACA chr17 37084992 37406836 - ACADVL chr17 7217125 7225266 + ACAP3 chr1 1292390 1309609 - ACIN1 chr14 23058564 23095614 - ACSF3 chr16 89088375 89164121 + ACTB chr7 5527148 5563784 - ADGRE5 chr19 14380501 14408725 + ADGRL1 chr19 14147743 14206187 - AFF2 chrX 148500617 149000663 + AGAP3 chr7 151085831 151144436 + AGO3 chr1 35930718 36072500 + AKAP8L chr19 15380050 15419141 - AKT2 chr19 40230317 40285536 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002470.2 chr22 20979462 20998121 + AC004812.2 chr12 120116907 120119000 + AC073957.2 chr7 1055360 1059261 - AC091271.1 chr17 59618553 59619714 - AF131216.3 chr8 11345748 11347502 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA