exRNAdisease

Entry Detail

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General Information

Database ID: exR0383524 RNA Name: PABPC1 RNA Type: mRNA Chromosome: chr8 Starnd: - Coordinate: Start Site(bp): 100685816 End Site(bp): 100722809 External Links: ENSG00000070756

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ALDH18A1 chr10 95605941 95656711 - AC027796.3 chr17 3585149 3636249 - ACOX3 chr4 8366282 8440723 - ABHD14B chr3 51968510 51983409 - ADNP2 chr18 80109262 80147523 + AGPAT5 chr8 6708642 6761503 + AL022318.4 chr22 39014363 39033276 + ADH5 chr4 99070978 99088801 - ALDH1B1 chr9 38392702 38398661 + ACTL6A chr3 179562886 179588407 + ADCY1 chr7 45574140 45723116 + ADAR chr1 154582057 154628013 - AFDN chr6 167826922 167972023 + ABT1 chr6 26596953 26600739 + AC010422.3 chr19 12643831 12648397 - ACTG1 chr17 81509971 81523847 - AKAP9 chr7 91940867 92110673 + AC116366.3 chr5 132410832 132646079 + AC138811.2 chr16 18788063 18801519 - ACTB chr7 5527148 5563784 - AC011005.1 chr7 129126518 129130793 + ALDH9A1 chr1 165662216 165698863 - AHDC1 chr1 27534035 27604431 - AC010463.1 chr19 17267418 17282966 + ADAMTS7 chr15 78759206 78811464 - AFG1L chr6 108294991 108526796 + ADAMTSL4 chr1 150549369 150560937 + AC008982.1 chr19 38817471 38840178 - AC020909.1 chr19 50415799 50428409 + AC118549.1 chr1 77562416 77683419 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4709-5p chr14 74480175 74480196 - hsa-miR-3620-5p chr1 228097285 228097306 + hsa-miR-7705 chr8 100703002 100703024 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC010442.1 chr5 466124 473098 - AC016876.2 chr17 7581964 7584086 - AC068473.5 chr18 79677287 79679358 - AC114271.1 chr19 10333436 10336248 + AD000090.1 chr19 35557956 35581954 + AL121985.1 chr1 160670778 160699761 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA