exRNAdisease

Entry Detail

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General Information

Database ID: exR0384128 RNA Name: PKDCC RNA Type: mRNA Chromosome: chr2 Starnd: + Coordinate: Start Site(bp): 42048021 End Site(bp): 42058517 External Links: ENSG00000162878

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAAS chr12 53307456 53324864 - AC010323.1 chr19 8308283 8321379 - AC073508.2 chr17 40627356 40665141 - AC091167.2 chr15 90249556 90272208 + AC138811.2 chr16 18788063 18801519 - ACIN1 chr14 23058564 23095614 - ACTG1 chr17 81509971 81523847 - ACTN4 chr19 38647649 38731589 + AGPAT1 chr6 32168212 32178096 - AKT1 chr14 104769349 104795751 - AKT2 chr19 40230317 40285536 - AL358113.1 chr9 69035747 69255187 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC067852.2 chr17 42552436 42554748 - AC109460.3 chr16 28974804 28990775 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA