exRNAdisease

Entry Detail

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General Information

Database ID: exR0384190 RNA Name: PLCG2 RNA Type: mRNA Chromosome: chr16 Starnd: + Coordinate: Start Site(bp): 81739097 End Site(bp): 81962685 External Links: ENSG00000197943

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC000093.1 chr22 19717220 19724772 + AC005943.1 chr19 1578339 1605445 - AC009133.6 chr16 29812261 29820092 + AC091167.2 chr15 90249556 90272208 + AC137834.1 chr12 57249609 57296484 - AC138811.2 chr16 18788063 18801519 - AC245033.1 chr15 82536788 82573194 - ACTB chr7 5527148 5563784 - ADCY9 chr16 3953387 4116442 - AGO1 chr1 35869808 35930532 + AHCY chr20 34280268 34311802 - AKAP1 chr17 57085092 57121346 + AL365205.1 chr6 41780349 41790141 + ALDH1A2 chr15 57953424 58497866 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-6506-3p chr16 15611031 15611052 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC067930.1 chr8 143579636 143580670 + AC067930.4 chr8 143573490 143577397 + AC091564.7 chr11 6610883 6616594 - AC099524.1 chr16 81738248 81767868 + AC109460.3 chr16 28974804 28990775 + AD000090.1 chr19 35557956 35581954 + AL096870.2 chr14 24209646 24215987 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA