exRNAdisease

Entry Detail

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General Information

Database ID: exR0384269 RNA Name: PLXNA1 RNA Type: mRNA Chromosome: chr3 Starnd: + Coordinate: Start Site(bp): 126988594 End Site(bp): 127037392 External Links: ENSG00000114554

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAMP chr2 218264123 218270257 - AATF chr17 36948954 37056871 + ABCA2 chr9 137007234 137028922 - ABHD4 chr14 22598237 22613215 + ACAD10 chr12 111686056 111757107 + ADAM11 chr17 44758988 44781846 + ADAM9 chr8 38996869 39105261 + ADD1 chr4 2843857 2930076 + AGBL5 chr2 27042364 27070622 + AGO2 chr8 140520156 140635633 - AL139011.2 chr1 160216800 160285130 - AL162417.1 chr9 133098121 133163914 - AL513165.2 chr9 37512547 37592469 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-96-5p chr7 129774739 129774761 - hsa-miR-7-5p chr19 4770700 4770723 + hsa-miR-182-5p chr7 129770447 129770470 - hsa-miR-205-5p chr1 209432166 209432187 + hsa-miR-185-5p chr22 20033153 20033174 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002470.2 chr22 20979462 20998121 + AC012531.1 chr12 54019910 54022589 + AC016586.1 chr19 4061615 4062749 - AC022007.1 chr3 10004048 10011209 - AC026740.1 chr5 675826 676616 + AL132780.1 chr14 22929607 22956374 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA