exRNAdisease

Entry Detail

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General Information

Database ID: exR0384274 RNA Name: PLXNB2 RNA Type: mRNA Chromosome: chr22 Starnd: - Coordinate: Start Site(bp): 50274979 End Site(bp): 50307646 External Links: ENSG00000196576

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AATK chr17 81110487 81166221 - ABHD5 chr3 43690108 43734371 + ACTB chr7 5527148 5563784 - ACTR1B chr2 97655939 97664044 - ADGRV1 chr5 90529344 91164437 + ADSL chr22 40346500 40390463 + AGO2 chr8 140520156 140635633 - AL022238.4 chr22 40346529 40410054 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-138-5p chr16 56858527 56858549 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010680.4 chr2 178616581 178617123 + AC020663.1 chr16 4730115 4752565 - AC060780.1 chr17 43148368 43171037 - AC242842.1 chr1 149607765 149612402 + AL022322.1 chr22 38090127 38091559 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA