exRNAdisease

Entry Detail

---



General Information

Database ID: exR0384332 RNA Name: PODXL RNA Type: mRNA Chromosome: chr7 Starnd: - Coordinate: Start Site(bp): 131500262 End Site(bp): 131558217 External Links: ENSG00000128567

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004922.1 chr7 99325879 99394653 + AC005943.1 chr19 1578339 1605445 - AC010422.3 chr19 12643831 12648397 - AC073508.2 chr17 40627356 40665141 - AC091167.2 chr15 90249556 90272208 + AC118553.2 chr1 99970011 100083321 + AC135050.2 chr16 31083439 31094956 - ACAA2 chr18 49782164 49813953 - ACAD8 chr11 134253495 134265855 + ACP1 chr2 264140 278283 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR1A chr10 102461881 102502712 - ADCY3 chr2 24819169 24919839 - ADD3 chr10 109996368 110135565 + AFDN chr6 167826922 167972023 + AHCY chr20 34280268 34311802 - AIF1L chr9 131096476 131123152 + AKT1 chr14 104769349 104795751 - AKT1S1 chr19 49869033 49878459 - AL133352.1 chr10 100505628 100529881 - AL162417.1 chr9 133098121 133163914 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-103a-3p chr5 168560904 168560926 - hsa-miR-4709-5p chr14 74480175 74480196 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA