exRNAdisease

Entry Detail

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General Information

Database ID: exR0384561 RNA Name: PPP6R1 RNA Type: mRNA Chromosome: chr19 Starnd: - Coordinate: Start Site(bp): 55229779 End Site(bp): 55259017 External Links: ENSG00000105063

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007192.1 chr19 18153158 18178117 + AC010323.1 chr19 8308283 8321379 - AC118549.1 chr1 77562416 77683419 - ACBD4 chr17 45132600 45144181 + ACOT7 chr1 6264269 6394391 - ACOX1 chr17 75941507 75979177 - ACSS2 chr20 34872146 34927962 + ACTB chr7 5527148 5563784 - ADCK1 chr14 77800109 77935014 + AHCY chr20 34280268 34311802 - AHNAK chr11 62433542 62556235 - AL022238.4 chr22 40346529 40410054 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-642a-5p chr19 45674943 45674964 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC010327.5 chr19 55216660 55221616 + AC040162.3 chr16 67882461 67886367 + AC079322.1 chr15 72465128 72466262 - AC124068.2 chr15 89335053 89336161 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA