exRNAdisease

Entry Detail

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General Information

Database ID: exR0384607 RNA Name: PRDX2 RNA Type: mRNA Chromosome: chr19 Starnd: - Coordinate: Start Site(bp): 12796820 End Site(bp): 12801800 External Links: ENSG00000167815

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010422.3 chr19 12643831 12648397 - AC012184.2 chr16 70299194 70372582 + AC020909.1 chr19 50415799 50428409 + ACACA chr17 37084992 37406836 - ACADM chr1 75724347 75787575 + ACIN1 chr14 23058564 23095614 - ACO2 chr22 41469117 41528989 + ACTG1 chr17 81509971 81523847 - AHCY chr20 34280268 34311802 - AHCYL2 chr7 129225023 129430211 + AL713999.1 chr1 155169409 155187272 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-409-5p chr14 101065314 101065336 + hsa-miR-625-5p chr14 65471116 65471136 + hsa-miR-147b-3p chr15 45433098 45433118 + hsa-miR-639 chr19 14529603 14529625 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC074212.1 chr19 45764785 45769806 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA