exRNAdisease

Entry Detail

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General Information

Database ID: exR0384611 RNA Name: PRDX6 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 173477330 End Site(bp): 173488815 External Links: ENSG00000117592

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002985.1 chr19 18907013 18934397 - AC011511.4 chr19 10315471 10320678 - AC046185.1 chr17 63702845 63752097 - AC092143.1 chr16 89919165 89936092 + AC138969.1 chr16 16317444 16350590 + AC139530.2 chr17 81703371 81720539 + ACAA2 chr18 49782164 49813953 - ACBD6 chr1 180269653 180502954 - AFF1 chr4 86935002 87141054 + AKIRIN1 chr1 38991276 39006059 + AKT3 chr1 243488233 243851079 - AL136295.5 chr14 24147548 24166452 + AL365205.1 chr6 41780349 41790141 + ALDH9A1 chr1 165662216 165698863 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006141.1 chr17 51249579 51251748 - AC007406.5 chr12 273954 277123 - AC051619.7 chr15 45200325 45200632 - AC126365.1 chr17 20788071 20789584 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA