exRNAdisease

Entry Detail

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General Information

Database ID: exR0384661 RNA Name: PRKDC RNA Type: mRNA Chromosome: chr8 Starnd: - Coordinate: Start Site(bp): 47773111 End Site(bp): 47960178 External Links: ENSG00000253729

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC068533.4 chr7 66087761 66152277 + AC120057.2 chr17 7240427 7244635 - ACADVL chr17 7217125 7225266 + ACP1 chr2 264140 278283 + ACTB chr7 5527148 5563784 - ACTC1 chr15 34790230 34795549 - ACVR2A chr2 147844517 147930826 + ADAMTS1 chr21 26835755 26845409 - AL035078.4 chr11 31812391 32104665 + AL133352.1 chr10 100505628 100529881 - AL590132.1 chr1 210858125 211134146 - ALDH1B1 chr9 38392702 38398661 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC067930.1 chr8 143579636 143580670 + AC099568.2 chr1 89820174 89820868 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA