exRNAdisease

Entry Detail

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General Information

Database ID: exR0384754 RNA Name: PRRC2A RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 31620715 End Site(bp): 31637771 External Links: ENSG00000204469

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCB10 chr1 229516582 229558707 - ABHD16A chr6 31686955 31703356 - ABLIM1 chr10 114431113 114768061 - AC011448.1 chr19 19516227 19536076 + AC011462.1 chr19 41350853 41425001 + AC022384.1 chr3 10249372 10285796 + AC068580.4 chr11 1734821 1763954 - AC104109.3 chr5 134167170 134226071 - AC118549.1 chr1 77562416 77683419 - ACADVL chr17 7217125 7225266 + ACAP3 chr1 1292390 1309609 - ACTG1 chr17 81509971 81523847 - ACTR3 chr2 113890063 113962596 + ADIPOR1 chr1 202940826 202958572 - ADO chr10 62804720 62808479 + AGPAT5 chr8 6708642 6761503 + AHNAK chr11 62433542 62556235 - AIG1 chr6 143060496 143341058 + AKT1 chr14 104769349 104795751 - AKT2 chr19 40230317 40285536 - AL132780.3 chr14 22946270 22982258 - AL136295.5 chr14 24147548 24166452 + AL136454.1 chr1 192716132 192716653 + ALDH9A1 chr1 165662216 165698863 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004528.1 chr19 999796 1002757 - AC007406.5 chr12 273954 277123 - AC012236.1 chr15 31221999 31230838 - AC069185.1 chr8 11797928 11802568 - AC132217.1 chr11 2129121 2129964 - AD000090.1 chr19 35557956 35581954 + AGAP11 chr10 86970741 87010126 + AL136982.1 chr10 86992406 87010203 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA