exRNAdisease

Entry Detail

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General Information

Database ID: exR0384874 RNA Name: PTBP1 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 797075 End Site(bp): 812327 External Links: ENSG00000011304

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AATF chr17 36948954 37056871 + ABCF1 chr6 30571393 30597179 + ABLIM1 chr10 114431113 114768061 - AC005943.1 chr19 1578339 1605445 - AC010132.3 chr7 42909273 42932174 - AC010422.3 chr19 12643831 12648397 - AC073508.2 chr17 40627356 40665141 - AC135050.2 chr16 31083439 31094956 - AC138811.2 chr16 18788063 18801519 - ACBD3 chr1 226144679 226186741 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADAMTS8 chr11 130404923 130428609 - ADNP2 chr18 80109262 80147523 + AHCY chr20 34280268 34311802 - AHCYL1 chr1 109984765 110023742 + AHDC1 chr1 27534035 27604431 - AHR chr7 16916359 17346152 + AL136454.1 chr1 192716132 192716653 + AL136531.2 chr20 1317571 1393096 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-147a chr9 120244985 120245004 - hsa-miR-206 chr6 52144401 52144422 + hsa-miR-4523 chr17 29390668 29390688 + hsa-miR-4745-3p chr19 804977 804999 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC020928.2 chr19 36773712 36775908 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA