exRNAdisease

Entry Detail

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General Information

Database ID: exR0384921 RNA Name: PTOV1 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 49850735 End Site(bp): 49860744 External Links: ENSG00000104960

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AARS2 chr6 44298731 44313347 - ABHD12 chr20 25294742 25390835 - AC025165.3 chr12 57772660 57797554 + ACAA1 chr3 38103129 38137242 - ACLY chr17 41866917 41930542 - ACP1 chr2 264140 278283 + ADAMTS13 chr9 133414358 133459402 + ADI1 chr2 3497366 3519531 - ADNP2 chr18 80109262 80147523 + AFDN chr6 167826922 167972023 + AGL chr1 99850361 99924023 + AIMP1 chr4 106315544 106349456 + AKAP17A chrX 1591604 1602520 + AKT2 chr19 40230317 40285536 - AL031708.1 chr16 1632259 1686715 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4749-3p chr19 49854632 49854651 + hsa-miR-6800-5p chr19 49832022 49832042 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC026471.1 chr16 31456711 31459736 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA